SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

Garber, Arkadiy I.; Armbruster, Catherine R.; Lee, Stella E.; Cooper, Vaughn S.; Bomberger, Jennifer M.; McAllister, Sean M.

doi:10.1186/s12864-022-08382-2

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SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

2022
By Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; ...
Source: BMC Genomics, 23(1)

[PDF-1.28 MB]

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Details:

Journal Title:

BMC Genomics
Personal Author:

Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; Cooper, Vaughn S. ; Bomberger, Jennifer M. ; ... More +

Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; Cooper, Vaughn S. ; Bomberger, Jennifer M. ; McAllister, Sean M. Less -
NOAA Program & Office:

OAR (Oceanic and Atmospheric Research) ; PMEL (Pacific Marine Environmental Laboratory) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies)

OAR (Oceanic and Atmospheric Research) ; PMEL (Pacific Marine Environmental Laboratory) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies) Less -
Description:

Shotgun sequencing of cultured microbial isolates/individual eukaryotes (whole-genome sequencing) and microbial communities (metagenomics) has become commonplace in biology. Very often, sequenced samples encompass organisms spanning multiple domains of life, necessitating increasingly elaborate software for accurate taxonomic classification of assembled sequences.
Source:

BMC Genomics, 23(1)
DOI:

https://doi.org/10.1186/s12864-022-08382-2
ISSN:

1471-2164
Format:

PDF
Publisher:

Springer Science and Business Media LLC
Document Type:

Journal Article
Funding:

Grant no. NA15OAR4320063
License:

https://creativecommons.org/licenses/by/4.0/
Rights Information:

CC BY
Compliance:

Submitted
Main Document Checksum:

[+]

urn:sha256:c2455426592218c94ea7fa4af3dfc32ee4cf54eff3fc95f22c731fb59ebf506c
Download URL:

https://repository.library.noaa.gov/view/noaa/61426/noaa_61426_DS1.pdf
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No Additional Files

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SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

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