SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

Garber, Arkadiy I.; Armbruster, Catherine R.; Lee, Stella E.; Cooper, Vaughn S.; Bomberger, Jennifer M.; McAllister, Sean M.

doi:10.1186/s12864-022-08382-2

Advanced Search

Select up to three search categories and corresponding keywords using the fields to the right. Refer to the Help section for more detailed instructions.

Search our Collections & Repository

Advanced Search
Custom Query

All these words:

For very narrow results

This exact word or phrase:

When looking for a specific result

Any of these words:

Best used for discovery & interchangable words

None of these words:

Recommended to be used in conjunction with other fields

Language:

Dates

Publication Date Range:

to

Document Data

Title:

Document Type:

Library

Collection:

Series:

People

Author:

Clear All

Query Builder

Query box

Clear All

For additional assistance using the Custom Query please check out our Help Page

The NOAA IR serves as an archival repository of NOAA-published products including scientific findings, journal articles, guidelines, recommendations, or other information authored or co-authored by NOAA or funded partners. As a repository, the NOAA IR retains documents in their original published format to ensure public access to scientific information.

i

SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

2022
By Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; ...
Source: BMC Genomics, 23(1)

[PDF-1.28 MB]

Details You May Also Like

Details:

Journal Title:

BMC Genomics
Personal Author:

Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; Cooper, Vaughn S. ; Bomberger, Jennifer M. ; ... More +

Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; Cooper, Vaughn S. ; Bomberger, Jennifer M. ; McAllister, Sean M. Less -
NOAA Program & Office:

OAR (Oceanic and Atmospheric Research) ; PMEL (Pacific Marine Environmental Laboratory) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies)

OAR (Oceanic and Atmospheric Research) ; PMEL (Pacific Marine Environmental Laboratory) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies) Less -
Description:

Shotgun sequencing of cultured microbial isolates/individual eukaryotes (whole-genome sequencing) and microbial communities (metagenomics) has become commonplace in biology. Very often, sequenced samples encompass organisms spanning multiple domains of life, necessitating increasingly elaborate software for accurate taxonomic classification of assembled sequences.
Source:

BMC Genomics, 23(1)
DOI:

https://doi.org/10.1186/s12864-022-08382-2
ISSN:

1471-2164
Format:

PDF
Publisher:

Springer Science and Business Media LLC
Document Type:

Journal Article
Funding:

Grant no. NA15OAR4320063
License:

https://creativecommons.org/licenses/by/4.0/
Rights Information:

CC BY
Compliance:

Submitted
Main Document Checksum:

[+]

urn:sha256:c2455426592218c94ea7fa4af3dfc32ee4cf54eff3fc95f22c731fb59ebf506c
Download URL:

https://repository.library.noaa.gov/view/noaa/61426/noaa_61426_DS1.pdf
File Type:

No Additional Files

More +

SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

Details:

Supporting Files

You May Also Like