SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs

Details

• Journal Title:
  BMC Genomics
• Personal Author:
  Garber, Arkadiy I. ; Armbruster, Catherine R. ; Lee, Stella E. ; Cooper, Vaughn S. ; Bomberger, Jennifer M. ; McAllister, Sean M.
• NOAA Program & Office:
  OAR (Oceanic and Atmospheric Research) ; PMEL (Pacific Marine Environmental Laboratory) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies)
• Description:
  Shotgun sequencing of cultured microbial isolates/individual eukaryotes (whole-genome sequencing) and microbial communities (metagenomics) has become commonplace in biology. Very often, sequenced samples encompass organisms spanning multiple domains of life, necessitating increasingly elaborate software for accurate taxonomic classification of assembled sequences.
• Source:
  BMC Genomics, 23(1)
• DOI:
  https://doi.org/10.1186/s12864-022-08382-2
• ISSN:
  1471-2164
• Format:
  PDF
• Publisher:
  Springer Science and Business Media LLC
• Document Type:
  Journal Article
• Funding:
  Grant no. NA15OAR4320063
• License:
  https://creativecommons.org/licenses/by/4.0/
• Rights Information:
  CC BY
• Compliance:
  Submitted
• Main Document Checksum:
  urn:sha256:c2455426592218c94ea7fa4af3dfc32ee4cf54eff3fc95f22c731fb59ebf506c
• Download URL:
  https://repository.library.noaa.gov/view/noaa/61426/noaa_61426_DS1.pdf
• File Type:
  [PDF - 1.28 MB ]