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Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next-Generation Sequencing
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2017
Source: G3 (Bethesda)
[PDF-1.56 MB]
Details:
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Journal Title:G3: Genes, Genomes, Genetics
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Personal Author:
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NOAA Program & Office:
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Sea Grant Program:
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Description:Developments in next-generation sequencing allow genotyping of thousands of genetic markers across hundreds of individuals in a cost-effective manner. Because of this, it is now possible to rapidly produce dense genetic linkage maps for nonmodel species. Here, we report a dense genetic linkage map for red drum, a marine fish species of considerable economic importance in the southeastern United States and elsewhere. We used a prior microsatellite-based linkage map as a framework and incorporated 1794 haplotyped contigs derived from high-throughput, reduced representation DNA sequencing to produce a linkage map containing 1794 haplotyped restriction-site associated DNA (RAD) contigs, 437 anonymous microsatellites, and 44 expressed sequence-tag-linked microsatellites (EST-SSRs). A total of 274 candidate genes, identified from transcripts from a preliminary hydrocarbon exposure study, were localized to specific chromosomes, using a shared synteny approach. The linkage map will be a useful resource for red drum commercial and restoration aquaculture, and for better understanding and managing populations of red drum in the wild.
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Keywords:
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Source:G3 (Bethesda);. 2017 Mar 10;7(3):843-850.;
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Pubmed Central ID:PMC5345714
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Document Type:
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Funding:
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Rights Information:CC BY
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Compliance:PMC
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Main Document Checksum:urn:sha256:8b571c683337c8948e1036dfb1ffb56136425257d9127c4e373240173f2b3376
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