From collection to analysis: Developing data pipelines for imaging FlowCytobot to support ecological monitoring in the waters of Alaska

Kurtay, G.; Staneva, V.; Nielsen, J. M.; Gann, J. C.; Mordy, C. W.; Tabisola, H.

doi:10.25923/fwpq-my83

i

From collection to analysis: Developing data pipelines for imaging FlowCytobot to support ecological monitoring in the waters of Alaska

2026
By Kurtay, G. ; Staneva, V. ; Nielsen, J. M. ; ...
Series: NOAA technical memorandum NMFS-AFSC 506

Details

Personal Author:

Kurtay, G. ; Staneva, V. ; Nielsen, J. M. ; Gann, J. C. ; Mordy, C. W. ; Tabisola, H.
Corporate Authors:

Alaska Fisheries Science Center (U.S.) ; Auke Bay Laboratories (Juneau, Alaska) ; Cooperative Institute for Climate, Ocean, and Ecosystem Studies. ; Pacific Marine Environmental Laboratory (U.S.) ; eScience Institute.
NOAA Program & Office:

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center) ; CICOES (Cooperative Institute for Climate, Ocean and Ecosystem Studies)
Description:

Phytoplankton are key to ocean ecosystem production and global carbon cycling. The Imaging FlowCytobot (IFCB) allows for monitoring of these microscopic organisms by capturing detailed images of plankton particles in water samples.
Keywords:

Cytometry Ecosystem FlowCytobot Imaging Jupyter Phytoplankton Python
Series:

NOAA technical memorandum NMFS-AFSC 506
DOI:

https://doi.org/10.25923/fwpq-my83
Format:

pdf
Document Type:

Technical Memorandum
License:

https://creativecommons.org/publicdomain/zero/1.0/
Rights Information:

CC0 Public Domain
Compliance:

Submitted
Main Document Checksum:

urn:sha-512:af4407e00c52a60fe63d78f64845a86631e32d730ccab3837cf28d7aea9c383a74d3b20a56880a8de2f3f7bc9d44487067b6434699d0a980c92b5662c265a568
Download URL:

https://repository.library.noaa.gov/view/noaa/72400/noaa_72400_DS1.pdf
File Type:

[PDF - 1.61 MB ]

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