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Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome
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2023
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Source: Microbiome, 11(1)
[PDF-5.83 MB]
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Journal Title:Microbiome
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Description:While many studies have reported that the structure of the gut and skin microbiota is driven by both species-specific and habitat-specific factors, the relative importance of host-specific versus environmental factors in wild vertebrates remains poorly understood. The aim of this study was to determine the diversity and composition of fish skin, gut, and surrounding water bacterial communities (hereafter referred to as microbiota) and assess the extent to which host habitat and phylogeny predict microbiota similarity. Skin swabs and gut samples from 334 fish belonging to 17 species were sampled in three Laurentian Great Lakes (LGLs) habitats (Detroit River, Lake Erie, Lake Ontario). We also collected and filtered water samples at the time of fish collection. We analyzed bacterial community composition using 16S metabarcoding and tested for community variation.
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Source:Microbiome, 11(1)
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DOI:
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ISSN:2049-2618
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Rights Information:CC BY
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Compliance:Submitted
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