loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing

Zhou, Zehua T; Owens, Gregory L; Larson, Wesley A; Lou, Runyang Nicolas; Sudmant, Peter H

doi:10.1093/bioadv/vbae098

i

loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing

2024
By Zhou, Zehua T ; Owens, Gregory L ; Larson, Wesley A ; ...

Details

Journal Title:

Bioinformatics Advances
Personal Author:

Zhou, Zehua T ; Owens, Gregory L ; Larson, Wesley A ; Lou, Runyang Nicolas ; Sudmant, Peter H
NOAA Program & Office:

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center)
Description:

We developed loco-pipe, a Snakemake pipeline that seamlessly streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data. loco-pipe is highly automated, easily customizable, massively parallelized, and thus is a valuable tool for both new and experienced users of lcWGS.
Source:

Bioinformatics Advances, 4(1)
DOI:

https://doi.org/10.1093/bioadv/vbae098
ISSN:

2635-0041
Format:

PDF
Publisher:

Oxford University Press (OUP)
Document Type:

Journal Article
License:

https://creativecommons.org/licenses/by/4.0/
Rights Information:

CC BY
Compliance:

Submitted
Main Document Checksum:

urn:sha-512:47f2194099946821a894113da0de76c2a9d5fa9473e65c675725a8c8f4278abf7315625a27b7b0c4d9163dc96282c01ffdeb7e134fc62e0ca675d69958998b2d
Download URL:

https://repository.library.noaa.gov/view/noaa/61864/noaa_61864_DS1.pdf
File Type:

[PDF - 1.09 MB ]

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