loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing

Zhou, Zehua T; Owens, Gregory L; Larson, Wesley A; Lou, Runyang Nicolas; Sudmant, Peter H

doi:10.1093/bioadv/vbae098

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The NOAA IR serves as an archival repository of NOAA-published products including scientific findings, journal articles, guidelines, recommendations, or other information authored or co-authored by NOAA or funded partners. As a repository, the NOAA IR retains documents in their original published format to ensure public access to scientific information.

i

loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing

2024
By Zhou, Zehua T ; Owens, Gregory L ; Larson, Wesley A ; ...
Source: Bioinformatics Advances, 4(1)

[PDF-1.09 MB]

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Journal Title:

Bioinformatics Advances
Personal Author:

Zhou, Zehua T ; Owens, Gregory L ; Larson, Wesley A ; Lou, Runyang Nicolas ; Sudmant, Peter H

Zhou, Zehua T ; Owens, Gregory L ; Larson, Wesley A ; Lou, Runyang Nicolas ; Sudmant, Peter H Less -
NOAA Program & Office:

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center)

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center) Less -
Description:

We developed loco-pipe, a Snakemake pipeline that seamlessly streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data. loco-pipe is highly automated, easily customizable, massively parallelized, and thus is a valuable tool for both new and experienced users of lcWGS.
Source:

Bioinformatics Advances, 4(1)
DOI:

https://doi.org/10.1093/bioadv/vbae098
ISSN:

2635-0041
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PDF
Publisher:

Oxford University Press (OUP)
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Journal Article
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https://creativecommons.org/licenses/by/4.0/
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CC BY
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Submitted
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urn:sha-512:47f2194099946821a894113da0de76c2a9d5fa9473e65c675725a8c8f4278abf7315625a27b7b0c4d9163dc96282c01ffdeb7e134fc62e0ca675d69958998b2d
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loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing

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