Runs of homozygosity in killer whale genomes provide a global record of demographic histories

Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Martin, Sarah L. Fordyce; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; Hanson, M. Bradley; Li, Songhai; Martin, Michael D.; Robertson, Kelly M.; Samarra, Filipa I. P.; de Stephanis, Renaud; Tavares, Sara B.; Tixier, Paul; Totterdell, John A.; Wade, Paul; Wolf, Jochen B. W.; Fan, Guangyi; Zhang, Yaolei; Morin, Phillip A.

doi:10.1111/mec.16137

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The NOAA IR serves as an archival repository of NOAA-published products including scientific findings, journal articles, guidelines, recommendations, or other information authored or co-authored by NOAA or funded partners. As a repository, the NOAA IR retains documents in their original published format to ensure public access to scientific information.

i

Runs of homozygosity in killer whale genomes provide a global record of demographic histories

2021
By Foote, Andrew D. ; Hooper, Rebecca ; Alexander, Alana ; ...
Source: Molecular Ecology, 30(23), 6162-6177

[PDF-1.52 MB]

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Details:

Journal Title:

Molecular Ecology
Personal Author:

Foote, Andrew D. ; Hooper, Rebecca ; Alexander, Alana ; Baird, Robin W. ; Baker, Charles Scott ; ... More +

Foote, Andrew D. ; Hooper, Rebecca ; Alexander, Alana ; Baird, Robin W. ; Baker, Charles Scott ; Ballance, Lisa ; Barlow, Jay ; Brownlow, Andrew ; Collins, Tim ; Constantine, Rochelle ; Dalla Rosa, Luciano ; Davison, Nicholas J. ; Durban, John W. ; Esteban, Ruth ; Excoffier, Laurent ; Martin, Sarah L. Fordyce ; Forney, Karin A. ; Gerrodette, Tim ; Gilbert, M. Thomas P. ; Guinet, Christophe ; Hanson, M. Bradley ; Li, Songhai ; Martin, Michael D. ; Robertson, Kelly M. ; Samarra, Filipa I. P. ; de Stephanis, Renaud ; Tavares, Sara B. ; Tixier, Paul ; Totterdell, John A. ; Wade, Paul ; Wolf, Jochen B. W. ; Fan, Guangyi ; Zhang, Yaolei ; Morin, Phillip A. Less -
NOAA Program & Office:

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center) ; NWFSC (Northwest Fisheries Science Center) ; SWFSC (Southwest Fisheries Science Center)

NMFS (National Marine Fisheries Service) ; AFSC (Alaska Fisheries Science Center) ; NWFSC (Northwest Fisheries Science Center) ; SWFSC (Southwest Fisheries Science Center) Less -
Description:

Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identi - cal by descent from each parent. Length distributions of ROH are informative about population history; specifically, the probability of inbreeding mediated by mating sys - tem and/or population demography. Here, we investigated whether variation in killer whale ( Orcinus orca ) demographic history is reflected in genome- wide heterozygosity and ROH length distributions, using a global data set of 26 genomes representative
Keywords:

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Ecology, Evolution, Behavior And Systematics Genetics
Source:

Molecular Ecology, 30(23), 6162-6177
DOI:

https://doi.org/10.1111/mec.16137
ISSN:

0962-1083;1365-294X;
Format:

PDF
Publisher:

Wiley
Document Type:

Journal Article
License:

https://creativecommons.org/licenses/by-nc/4.0/
Rights Information:

CC BY-NC
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Library
Main Document Checksum:

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urn:sha256:9d92b9c55aecfd94c298569722db9006e6623f1ba1022e699950cb9054dd7028
Download URL:

https://repository.library.noaa.gov/view/noaa/53146/noaa_53146_DS1.pdf
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