Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A.

doi:10.1128/mSystems.01194-20

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The NOAA IR serves as an archival repository of NOAA-published products including scientific findings, journal articles, guidelines, recommendations, or other information authored or co-authored by NOAA or funded partners. As a repository, the NOAA IR retains documents in their original published format to ensure public access to scientific information.

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Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

2021
By Vangay, Pajau ; Burgin, Josephine ; Johnston, Anjanette ; ...
Source: mSystems, 6(1)

[PDF-1.77 MB]

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Journal Title:

mSystems
Personal Author:

Vangay, Pajau ; Burgin, Josephine ; Johnston, Anjanette ; Beck, Kristen L. ; Berrios, Daniel C. ; ... More +

Vangay, Pajau ; Burgin, Josephine ; Johnston, Anjanette ; Beck, Kristen L. ; Berrios, Daniel C. ; Blumberg, Kai ; Canon, Shane ; Chain, Patrick ; Chandonia, John-Marc ; Christianson, Danielle ; Costes, Sylvain V. ; Damerow, Joan ; Duncan, William D. ; Dundore-Arias, Jose Pablo ; Fagnan, Kjiersten ; Galazka, Jonathan M. ; Gibbons, Sean M. ; Hays, David ; Hervey, Judson ; Hu, Bin ; Hurwitz, Bonnie L. ; Jaiswal, Pankaj ; Joachimiak, Marcin P. ; Kinkel, Linda ; Ladau, Joshua ; Martin, Stanton L. ; McCue, Lee Ann ; Miller, Kayd ; Mouncey, Nigel ; Mungall, Chris ; Pafilis, Evangelos ; Reddy, T. B. K. ; Richardson, Lorna ; Roux, Simon ; Schriml, Lynn M. ; Shaffer, Justin P. ; Sundaramurthi, Jagadish Chandrabose ; Thompson, Luke R. ; Timme, Ruth E. ; Zheng, Jie ; Wood-Charlson, Elisha M. ; Eloe-Fadrosh, Emiley A. Less -
NOAA Program & Office:

OAR (Oceanic and Atmospheric Research) ; AOML (Atlantic Oceanographic and Meteorological Laboratory)

OAR (Oceanic and Atmospheric Research) ; AOML (Atlantic Oceanographic and Meteorological Laboratory) Less -
Description:

Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
Keywords:

[+]

Microorganisms Data Standards Metadata Microbiome Ontology
Source:

mSystems, 6(1)
DOI:

https://doi.org/10.1128/mSystems.01194-20
Document Type:

Journal Article
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CC BY
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Submitted
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urn:sha256:be65dadc8de2b80a5e35cbf141864c882651a5275eedbd9d0e1aed6a194c9b29
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https://repository.library.noaa.gov/view/noaa/28860/noaa_28860_DS1.pdf
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Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

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